Functional morphology and paleobiology of the pliocene rodent Actenomys (Caviomorpha: Octodontidae): the evolution to a subterranean mode of life

The Pliocene caviomorph rodent Actenomys has long been recognized as an early fossorial representative of the subfamily Ctenomyinae (Octodontidae), which includes one living genus, Ctenomys (tuco-tucos), and several species widely distributed in South America. To assess the de gree of specialization for digging in Actenomys , we performed morphological comparisons with other octodontid genera (Octodon, Spalacopus , and Ctenomys) of known mode of life and behaviour. As a whole, our results indicate that, in terms of morphological specializations for digging, Actenomys occupies an intermediate position between Octodon , a generalized semi-fossorial rodent which forages above ground, and Ctenomys-Spalacopus , two highly specialized subterranean forms. The position of the deltoid process (humerus) and the length of the olecranon process (ulna)–two traits which affect the out-forces exerted by several forelimb muscles–were in Actenomys intermediate between non-subterranean and subterranean taxa. The skull, particularly the rostrum, appears to be strong, and sagittal and nuchal crests are well marked. The zygomatic arches arc as flared as those of the generalized Octodon. Notably, the upper and lower incisors of Actenomys were extremely procumbent, as in many highly-specialized chisel-tooth digging species. Based upon the stratigraphic and sedimentological analysis of the palaeosoils containing its fossil remains, we suggest that Actenomys lived in an environment of moderate to hig primary productivity. The texture of the palaeosoils indicate that theywere hard and highly cohesive. This situation, which contrasts with that observed in living Ctenomyinae, has relevant implications for burrowing cost. The integration of morphological and palaeoenvironmental data allowed testing of hypotheses about the palaeobiological attributes of this ancestral ctenomyine.     

Are neopolyploids a likely route for a transgene walk to the wild? The Aegilops ovata × Triticum turgidum durum case

Spontaneous hybridization between durum wheat ( Triticum turgidum durum ) and Aegilops ovata is regularly observed in nature. The frequency of spontaneous amphiploidy in sympatric populations was estimated at 10⁻⁶ (direct in situ observations and germinated seed collected from A. ovata plants). In nursery conditions some genotype combinations gave frequencies that were much higher at 10⁻³. Genomic in situ hybridization revealed that fertile amphiploids had arisen through unreduced gametes, and that some of them carried wheat −  A. ovata recombinant chromosomes. The frequency of production of unreduced gametes is probably genetically inherited. Amphiploids provide a route for gene flow, including that of transgenes, to the wild. Gene flow could potentially be minimized through the choice of wheat cultivars that produce a low frequency of unreduced gametes.  © 2004 The Linnean Society of London, Biological Journal of the Linnean Society , 2004, 82 , 503–510.     

Biogeography of the ubiquitous marine bacterium Alteromonas macleodii determined by multilocus sequence analysis

Twenty‐three isolates of the widely distributed marine bacteria Alteromonas macleodii have been analysed by multilocus sequence analysis combined with phylogenetic and multivariate statistical analyses. The strains originated from the Pacific Ocean, Mediterranean Sea, English Channel, Black Sea and Thailand. Using the nucleotide sequences of nine loci for each of the 23 isolates, a robust identification was achieved of different clades within the single species. Strains generally clustered with the depth in the water column from which the isolate originated. Strains also showed more recombination with isolates from the same vicinity, suggesting that genetic exchange plays a role in diversification of planktonic marine prokaryotes. This study thus shows for the first time for a large set of isolates of a species of planktonic marine prokaryotes that multilocus sequence analysis overcomes the problems associated with the analysis of individual marker genes or presence of extensive recombination events. It can thus achieve intraspecific identification to the level of genotypes and, by comparison with relevant environmental data, ecotypes.     

Consequences of Mediterranean warming events in seagrass (Posidonia oceanica) flowering records

Posidonia oceanica, a seagrass endemic to the Mediterranean forms extended and extremely persistent meadows. It is a clonal plant with an apparently irregular pattern of flowering events. An extensive bibliographic review allowed the reconstruction of past flowering events of this species around the Mediterranean, with a high degree of confidence for the last 30 years. The data series on annual flowering prevalence (FP, flowering records per total records) and flowering intensity (FI, fraction of flowering shoots) produced have been compared with four series on Sea Surface annual Temperature maxima (SST_max) obtained for the NW Mediterranean (averaged from the local data series of l'Estartit and Villefranche: 1957–2005) and for the Eastern, Western basin and the whole Mediterranean sea (extracted from NCEP Reynolds interpolated SST maps: 1982–2005). Significant warming trends are detected in the Mediterranean SST_max series, at a rate of (mean+SE) 0.04±0.01°C yr⁻¹ (R²=0.24, P<0.01, N=24 years), in the Eastern basin series (0.06±0.01°C yr⁻¹, R²=0.43, P<0.001, N=24 years) and in the long SST_max series of the NW Mediterranean (0.02±0.01 C yr⁻¹, R²=0.12, P<0.02, N=49 years). The magnitudes of the SST_max anomalies around the absolute warming trend do not increase with time in any SST_max series. Peaks of FP and FI in the Mediterranean seem to occur each 9–11 years, and coincide with peaks of annual SST_max. Annual FP and FI increase with the residuals of annual SST_max warming trend in all Mediterranean basins (FP_MED: R²=0.27, P<0.01, N=23; FP_NW: R²=0.34, P<0.01, N=31; FP_E: R²=0.20; P<0.10, N=23). An outstanding event of P. oceanica flowering across the Mediterranean has been registered in Autumn 2003; 1 month after the highest annual SST_max recorded in the series. The hypothesis of flowering induction by thermal stress as the possible cause of this relationship is discussed, as well as the potential use of P. oceanica flowering record as early indicator of biological change induced by global sea warming in Mediterranean marine ecosystems.     

Increased molecular divergence of two endemic Trachelipus (Isopoda,Oniscidea) species from Greece reveals patterns not congruent with current taxonomy

In the present study, we employed three mitochondrial DNA genetic markers in a phylogenetic analysis aiming at the delineation of the relationships amongst nominal Trachelipus kytherensis populations, as well as between populations of this species and of Trachelipus aegaeus and a new form, occurring syntopically with the latter. Both the phylogenetic analysis and the genetic distances separating populations, show the presence of several distinct and well differentiated clades that undermine the monophyly of T. kytherensis. On the other hand, despite the insular distribution of T. aegaeus populations, their divergence is low and the monophyly of this taxon can be rescued by the inclusion of two more insular populations previously assigned to T. kytherensis. The patterns of genetic divergence among clades are only partially congruent with the geographic distribution of populations. The validity of taxonomic characters used so far in the genus appears to be questionable; therefore, a more comprehensive phylogenetic study at a population level is deemed necessary for understanding the divergence of Trachelipus lineages. © 2008 The Linnean Society of London, Biological Journal of the Linnean Society, 2008, 95 , 361–370.     

A new cytochrome b phylogroup of the common vole (Microtus arvalis) endemic to the Balkans and its implications for the evolutionary history of the species

The phylogeographic architecture of the common vole, Microtus arvalis, has been well‐studied using mitochondrial DNA and used to test hypotheses relating to glacial refugia. The distribution of the five described cytochrome b (cyt b) lineages in Europe west of Russia has been interpreted as a consequence of postglacial expansion from both southern and central European refugia. A recently proposed competing model suggests that the ‘cradle’ of the M. arvalis lineages is in western central Europe from where they dispersed in different directions after the Last Glacial Maximum. In the present study, we report a new cyt b lineage of the common vole from the Balkans that is not closely related to any other lineage and whose presence might help resolve these issues of glacial refugia. The Balkan phylogroup occurs along the southern distributional border of M. arvalis in central and eastern Bosnia and Herzegovina, Montenegro, and eastern Serbia. Further north and west in Slovenia, Bosnia and Herzegovina, and Serbia, common voles belong to the previously‐described Eastern lineage, whereas both lineages are sympatric in one site in Bosnia and Herzegovina. The Balkan phylogroup most reasonably occupied a glacial refugium already known for various Balkan endemic species, in contrast to the recently proposed model. South‐east Europe is an absolutely crucial area for understanding the postglacial colonization history of small mammals in Europe and the present study adds to the very few previous detailed phylogeographic studies of this region. © 2010 The Linnean Society of London, Biological Journal of the Linnean Society, 2010, 100 , 788–796.     

BIPHONATION AS A PROMINENT FEATURE OF DHOLE CUON ALPINUS SOUNDS

ABSTRACT

Spectrographic analysis showed that dholes produce sounds with two fundamental frequencies (components): the high-frequency and the low-frequency, which may occur simultaneously or separately. The fundamental frequency of the low-frequency component varied from 0.52 to 1.44 kHz, and that of the high-frequency component from 5.51 to 10.77 kHz. In calls where both the frequencies occurred simultaneously, they were not integer multiples of each other. They also had different frequency modulations and had additional combinative frequency bands. These are features of biphonation. Our data showed biphonation occurs in a lot of dhole calls (20 to 92% of the calls, depending on the individual (n=14); average occurrence 44.3%, n=1317 sounds). The occurrence of biphonation did not differ between sexes and ages; however, occurrence of the high component only was significantly higher in subadult animals, whereas the occurrence of the low component only was significantly higher in adults. Based on the sound structures, we discuss probable mechanisms of sound production for both the components in the dhole. For the low component, the normal vocal folds oscillation mechanism is suggested. For the high component, four possible mechanisms of sound production are discussed. We conclude that the vortex-shedding mechanism is the most probable.     

BIOACOUSTICS INDEX OF CONTENTS VOLUME 14

ABSTRACT

Here we present an acoustic approach for reliable sexing in four whistling duck species from the genus Dendrocygna and compare it with molecular and cloacal inspection techniques. In the four examined species, the White-faced Whistling Duck D. viduata, Fulvous Whistling Duck D. bicolor, Cuban Whistling Duck D. arborea and Red-billed Whistling Duck D. autumnalis, sexes are indistinguishable by appearance. However all the four species show strong sexual differences in the structure of their species-specific loud whistles. For 59 examined birds, an acoustic-based sexing showed 100% accordance to the DNA PCR analysis, while the cloacal inspection showed only 89.8% accuracy. The results demonstrate that acoustic sexing represents a feasible alternative to the two traditional methods as a noninvasive tool for the distant sexing of the four whistling duck species both in captivity and in the wild.     

The acclimation of photosynthesis and respiration to temperature in the C3–C4 intermediate Salsola divaricata: induction of high respiratory CO2 release under low temperature

Photosynthesis in C₃–C₄ intermediates reduces carbon loss by photorespiration through refixing photorespired CO₂ within bundle sheath cells. This is beneficial under warm temperatures where rates of photorespiration are high; however, it is unknown how photosynthesis in C₃–C₄ plants acclimates to growth under cold conditions. Therefore, the cold tolerance of the C₃–C₄ Salsola divaricata was tested to determine whether it reverts to C₃ photosynthesis when grown under low temperatures. Plants were grown under cold (15/10 °C), moderate (25/18 °C) or hot (35/25 °C) day/night temperatures and analysed to determine how photosynthesis, respiration and C₃–C₄ features acclimate to these growth conditions. The CO₂ compensation point and net rates of CO₂ assimilation in cold‐grown plants changed dramatically when measured in response to temperature. However, this was not due to the loss of C₃–C₄ intermediacy, but rather to a large increase in mitochondrial respiration supported primarily by the non‐phosphorylating alternative oxidative pathway (AOP) and, to a lesser degree, the cytochrome oxidative pathway (COP). The increase in respiration and AOP capacity in cold‐grown plants likely protects against reactive oxygen species (ROS) in mitochondria and photodamage in chloroplasts by consuming excess reductant via the alternative mitochondrial respiratory electron transport chain.     

Epsilonematidae (Nematoda) from Chiloé (southern Chile), with descriptions of two new species

From a sandy beach in southern Chile (Quellón Viejo, Chiloé Island) five species of the nematode family Epsilonematidae are described or redescribed: Bathyepsilonema spongiosum sp.n., Epsilonema dentaturn Lorenzen, 1973, E. serrulatum Lorenzen, 1973, Metepsilonema chilotum sp.n. and M. leptaleum Lorenzen, 1973. In the studied beach Epsilonematidae represent up to 33% of the interstitial nematodes. Epsilonema dentaturn is the most common species; in most of the samples, it represents more than 50% of all Epsilonematidae found. The epsilonematids occur mainly in a narrow zone at the midtidal level.